Hello - ancient history student here!
The episode is based on a real account of Hypatia, found in a 10th century Byzantine text called the Suda. Ironically, this account is actually a Christian account, and is likely made up - it's an attempt to portray Hypatia as a pure, Christian virgin.
In the original text, the episode is supposed to be Hypatia saying 'women are not pure, we bleed - you are in love with something you think is beautiful, and this is the ugly truth'. It sounds a bit misogynistic to us, which is probably because the person who wrote the source was certainly a male and wanted to portray Hypatia as being incredibly chaste, almost to the point of self-loathing.
Modern interpretations of the episode take the view that Hypatia was saying 'you are in love with me only because I have a menstrual cycle and can reproduce; because I am a scientist, I am not going to do that - you may as well find someone else'. This is a slightly more palatable explanation, and if the event did happen (which I don't think it did) then this is the reason I like to believe.
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