Yes there are. However, they are not documented in such a way that 99.9% of people in this country would ever see them. They range from quarantining an area (if it's small enough for CDC or the military equivalent, based at Ft. Detrick in MD) and dealing with the issue (if they are able to do so), to laying down a defoliant like napalm in mass quantities or firebombing the entire area to wipe out the "infected" area.
The thought being that it if something like Ebola were ever able to be transmitted in an airborne manner vs. physical contact or through the blood, it is better to take out SOME people vs. taking the risk that it can spread to the entire populace. Cold but true...something along the line of "the lives of the few outweigh the lives of the many."
As for Plum Island (the one off of NY, not the one off of Mass), you won't find it at the CDC because it is run by the US Dept. of Agriculture (www.ars.usda.gov/plum/), ostensibly to study infectious diseases in foreign animals (mad cow disease from England ring a bell??). It is a classified facility, and works in conjunction with DHS and other agencies as "the nation's first line of defense against foreign animal diseases" (from their web site).
Having said all of this, I would say that some of the stuff in the movie is dramatized for effect! But there ARE plans for these kinds of situations, unseemly as they are.
Hope this helps.
Sully
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