Well, I don't know the exact time line, but Murphy ran to get Webber and then scrubbed in on the surgery. Shane basically left and since he was exhausted and feeling guilty, he passed out in the rain. Later it was after his father died Shane came back (took some time off) and he went to apologize for what happened to Alex dad, Alex told him to walk away and Shane wouldn't listen and tried to apologize again and that's when Alex lost it. Christina and Meredith pulled Alex off him and Christina took care of his injuries while Meredith tuned to Alex. Later an emergency board meeting was held and Meredith asked if it was about Shane and Alex, Owen said what about Shane, Meredith and Christina said nothing, and that's when Owen said an anonymous source filed a complaint, hence Murphy. So I don't think Murphy knew, only Mer and Christina did.
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