You could be right. Except, the only indication that it might be due to the pyramid, is that Kore tried to tell her that they weren't under attack. He was nearly able to successfully calm her down, but then - either due to the pyramid or post traumatic stress hallucinations - she saw the enemy on the monitor. That's when she ran out, and eventually died.
Also, during the climax, there was a scene where Cabren is surrounded by zombie versions (sort of) of everybody that died. Captain was one of them, as we recognize her by the mangled skeleton face. If the powers of the pyramid could use images of its victims against him, then one might possibly conclude that Captain was indeed one of the victims.
I'll agree though that this the only death in the film for which the reason isn't entirely clear.
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